EUKHIGHCONFIDENCEFILTER(1)

NAME
EukHighConfidenceFilter - detection of transfer RNA genes in genomic sequence

SYNOPSIS
EukQualityFilter [options]

DESCRIPTION
Options --result -i <file> tRNAscan-SE output file used as input --ss -s <file> tRNAscan-SE secondary structure file used as input --output -o <file path> Directory where output files will be written --prefix -p <name> Prefix for output file name --remove -r Remove filtered tRNA hits (default: filtered tRNA hits are only tagged) --cmscore1 -c1 <num> Domain-specific model score cutoff for secondary filtering (default = 50; -1 if not used for filtering) --ssscore1 -m1 <num> Secondary structure score cutoff for secondary filtering (default = 10; -1 if not used for filtering) --isoscore1 -e1 <num> Isotype-specific model score cutoff for secondary filtering (default = 70; -1 if not used for filtering) --isoscore2 -e2 <num> Isotype-specific model starting score cutoff for tertiary filtering (default = 70; -1 if not used for filtering) --isomaxscore2 -x <num> Maximum isotype-specific model score cutoff for tertiary filtering (default = 95) --help -h Print this help

AUTHOR
 This manpage was written by Nilesh Patra for the Debian distribution and
 can be used for any other usage of the program.