Contains all classes related to model optimization. The RunEstimator
interface
contains the method signatures which every optimizer must implement. There is a generic
class with common method implementations: RunEstimatorImpl
, but every specific
strategy to optimize the models should extend this class or at least implement the interface.
For example, PhyML
optimizer has his own implementation PhyMLv3AminoAcidRunEstimator
.
In future versions this vertical hierarchy, which could allow extension to support Nucleotide models,
should be transformed following a Bridge Pattern.